査読付き論文発表(欧文誌) [総説・著作へ]

- 2017 -

Teye K., Hashimoto K., Numata S., Ohta K., Haftek M., Hashimoto T.
Multimerization is required for antigen binding activity of an engineered IgM/IgG chimeric antibody recognizing a skin-related antigen.
Scientific Reports, 7: 8212 (2017)

Asada R., Umeda M., Adachi A., Senmatsu S., Abe T., Iwasaki H., Ohta K., Hoffman C., Hirota K.
Recruitment and delivery of the fission yeast Rst2 transcription factor via a local genome structure counteracts repression by Tup1-family corepressors.
Nucleic Acids Res., in press (2017)

Harada K., Kitaguchi T., Kamiya T., Aung K.H., Nakamura K., Ohta K, and Tsuboi T.
Lysophosphatidylinositol-induced activation of the cation channel TRPV2 triggers glucagon-like peptide-1 secretion in enteroendocrine L cells.
J. Biol. Chem., 292: 10855-10864(2017)

Adachi A., Senmatsu S., Asada R., Abe T., Hoffman C.S., Ohta K. and Hirota K.
Interplay between ADCRs and histone acetylation regulates the formation of accessible chromatin in fission yeast fbp1 upstream regulatory region.
Genes & Genetic Systems,, in press (2017)

Yamada S., Okamura M., Oda A., Murakami H., Ohta K., and Yamada Y.
Correlation of meiotic DSB formation and transcription initiation around fission yeast recombination hotspots.
Genetics, 206: 801-809 (2017)

- 2016 -

Ozawa T., Mizuhara T., Arata M., Shimada M., Niimi T., Okada K., Okada Y., and Ohta K.
Histone deacetylases control module-specific phenotypic plasticity in beetle weapons.
Proc. Natl. Acad. Sci. USA, 113(52): 15042-15047, doi: 10.1073/pnas.1615688114 (2016)

Hashimoto K., Kurosawa K., Murayama A., Seo H., & Ohta K.
B cell-based seamless engineering of antibody Fc domains.
PLoS One 11: e0167232. (2016) doi:10.1371/journal. pone.0167232

Takemata N. and Ohta K.
Role of non-coding RNA transcription around gene regulatory elements in transcription factor recruitment.
RNA Biology20:1-5 (2016)

Hirata Y., Oda A., Ohta K., and Aihara K.
Three-dimensional reconstruction of single-cell chromosome structure using recurrence plots.
Scientific Reports 6: 34982 (2016)

Miki A., Galipon J., Sawai S., Inada T., and Ohta K.
RNA decay systems enhance reciprocal switching of sense and antisense transcripts in response to glucose starvation.
Genes to Cells 21: 1276-1289, doi: 10.1111/gtc.12443 (2016)

Kumakura N., Otsuki H., Ito M., Nomoto M., Tada Y., Ohta K., and Watanabe Y.
Arabidopsis AtRRP44 has ribonuclease activity that is required for cell viability.
Plant Biotechnology 33: 77?85 (2016)

Takemata N, Oda A, Yamada T, Galipon J, Miyoshi T, Suzuki Y, Sugano S, Hoffman CS, Hirota K, Ohta K.
Local potentiation of stress-responsive genes by upstream noncoding transcription.
Nucleic Acids Res. 44:5174-5189, doi: 10.1093/nar/gkw142. (2016)

Tashiro S, Handa T, Matsuda A, Ban T, Takigawa T, Miyasato K, Ishii K, Kugou K, Ohta K, Hiraoka Y, Masukata H, Kanoh J.
Shugoshin forms a specialized chromatin domain at subtelomeres that regulates transcription and replication timing.
Nature Commun. 7:10393. doi: 10.1038/ncomms10393. (2016)

Mitsumori R., OhashI T., Kugou K., Ichino A., Taniguchi K., Ohta K., Uchida H., Oki M.
Analysis of novel Sir3 binding regions in Saccharomyces cerevisiae.
J. Biochem. 160:11-17. doi: 10.1093/jb/mvw021. (2016)

- 2015 -

Guy AT, Nagatsuka Y, Ooashi N, Inoue M, Nakata A, Greimel P, Inoue A, Nabetani T, Murayama A, Ohta K, Ito Y, Aoki J, Hirabayashi Y, Kamiguchi H.
Glycerophospholipid regulation of modality-specific sensory axon guidance in the spinal cord.
Science 349:974-977 (2015)

Oda A, Takemata N, Hirata Y, Miyoshi T, Suzuki Y, Sugano S, Ohta K.
Dynamic transition of transcription and chromatin landscape during fission yeast adaptation to glucose starvation.
Genes to Cells. 20: 392-407 (2015)

Asada R, Takemata N, Hoffman CS, Ohta K, Hirota K.
Antagonistic controls of chromatin and mRNA start site selection by Tup family corepressors and the CCAAT-binding factor.
Mol Cell Biol. 35: 847-855 (2015)

Ozawa T., Ohta K., Shimada M., Okada K., and Okada Y.
Environmental factors that affect pupation decision in the horned flour beetle Gnatocerus cornutus
Zool.Sci. 32: 183-187 (2015)

- 2014 -

Fawcett JA, Iida T, Takuno S, Sugino RP, Kado T, Kugou K, Mura S, Kobayashi T, Ohta K, Nakayama J, Innan H.
Population genomics of the fission yeast Schizosaccharomyces pombe.
PLoS One 9: e104241 (2014)

Ito M., Kugou K., Fawcett J.A., Mura S., Ikeda S., Innan H., and Ohta K.
Meiotic recombination cold spots in chromosomal cohesion sites
Genes to Cells 19: 359-379 (2014)

Kono H., Tamura M., Osada N., Suzuki H., Abe K., Moriwaki K., Ohta K., and Shiroishi T
Prdm9 polymorphism unveils mouse evolutionary tracks
DNA Research 21: 315-326 (2014)

- 2013 -

Yamada T., Ohta K.
Initiation of meiotic recombination in chromatin structure
J. Biochem. 154: 107-114 (2013)

Miyoshi T., Ito M., Ohta K.
Spatiotemporal regulation of meiotic recombination by Liaisonin
Bioarchitecture 3: 20-24 (2013)

Yamada S, Ohta K, Yamada T.
Acetylated Histone H3K9 is associated with meiotic recombination hotspots, and plays a role in recombination redundantly with other factors including the H3K4 methylase Set1 in fission yeast.(selected as a NAR top 5% “Featured Article”)
Nucleic Acids Res. 41: 3504-3517 (2013) doi: 10.1093/nar/gkt049

Galipon J., Miki A., Oda A., Inada T., and Ohta K.
Stress-induced lncRNAs evade nuclear degradation and enter the translational machinery
Genes to Cells 18: 353-368 (2013)

- 2012 -

Miyoshi T., Ito M., Kugou K., Yamada S., Furuichi M., Oda A., Yamada T., Hirota K., Masai H., & Ohta K.
A central coupler for recombination initiation linkng chromosome architecture to S phase checkpoint
Molecular Cell 47: 1-12; doi:10.1016/j.molcell.2012.06.023 (2012)

- 2011 -

Kurosawa K. & Ohta K.
Genetic diversification by somatic gene conversion
Genes 2: 48-58; doi:10.3390/genes2010048 (2011)

Morita T., Yamada T., Yamada S., Matsumoto K.,& Ohta K.
The fission yeast ATF/CREB family protein Atf21 plays important roles in production of normal spores
Genes to Cells 16: 217-230 (2011)

- 2010 -

Lin W., Kurosawa K., Maruyama A., Kagaya E., & Ohta K.
B cell display-based one-step method to generate chimeric human IgG monoclonal antibodies
Nucl. Acids Res. doi: 10.1093/nar/gkq1122 (2010)

Nemoto N., Udagawa T., Ohira T., Jiang L., Hirota K., Wilkinson C., Bahler J., Jones N., Ohta K., Wek R., Asano K.
The role of stress-activated Sty1 and Gcn2 kinases and proto-oncoprotein homologue Int6/eIF3e in responses to endogenous oxidative stress during histidine starvation
J. Mol. Biol. 404: 183-201 (2010)

Kurosawa K, Lin W, Ohta K.
Distinct roles of HDAC1 and HDAC2 in transcription and recombination at the immunoglobulin loci in the chicken B cell line DT40.
J. Biochem. 148:201-207. (2010)

Yoshida T., Shimada K., Oma Y., Kalck V., Akimura K., Taddei A., Iwahashi H., Kugou K., Ohta K., Gasser S.M. & Harata M.
Actin-related Protein Arp6 Influences H2AZ-dependent and -independent Gene Expression and Links Ribosomal Protein Genes to Nuclear Pores
PLoS Genetics, 6(4):e1000910. (2010)

- 2009 -

Kugou K., Fukuda T. Yamada S., Ito M., Sasanuma H., Mori S., Katou Y., Itoh T., Matsumoto K., Shibata T., Shirahige K., and Ohta K.
Rec8 guides canonical Spo11 distribution along yeast meiotic chromosomes
Mol. Biol. Cell, 20(13): 3064-76 (2009)

Ohuchi T., Seki M., Kugou K., Tada S., Ohta K., and Enomoto T.
Accumulation of sumoylated Rad52 in checkpoint mutants perturbed in DNA replication
DNA repair, 8: 690-696 (2009)

Hirota K and Ohta K.
Cascade transcription of mRNA-type long non-coding RNAs (mlonRNAs) and local chromatin remodeling.
Epigenetics, 4: 5-7 (2009)

Hartsuiker E., Mizuno K., Molna M., Kohli J., Ohta K. and Carr A.M.
Ctp1CtIP and the Rad32Mre11 nuclease activity are required for Rec12Spo11 removal, but this activity is dispensable for other MRN-dependent meiotic functions
Mol. Cell Biol., 29: 1071-1681 (2009)

- 2008 -

Yamada K., Hirota K., Mizuno K, Shibata T., and Ohta K.
Essential roles of Snf21, a Swi2/Snf2 family chromatin remodeler, in fission yeast mitosis
Genes & Genetic Systems, 83: 361-372 (2008)

Fujino T., Hirota K., Ohta K. and Tahara T.
In-cell viscosity measurement using a fluorescence up-conversion microscope
Chemistry Letters, 37: 1240-1241 (2008)

Hirota K., Miyoshi T., Kugou K., Hoffman C.S., Shibata T., and Ohta K.
Stepwise chromatin remodeling by a cascade of transcription initiation of non-coding RNAs
Nature, 456: 130-134 (2008)

Hikiba J., Hirota K., Kagawa W., Ikawa S., Kinebuchi T., Sakane I., Takizawa, Yokoyama S., Mandon-Pepin B., Nicolas A., Shibata S., Ohta K., and Kurumizaka H.
Structural and functional analyses of the DMC1-M200V polymorphism found in the human population
Nucl. Acids Res., 36: 4181-4190 (2008)

Shimada K., Oma Y., Schleker T., Kugou K., Ohta K., Harata M. and Gasser SM.
Ino80 chromatin remodeling complex promotes recovery of stalled replication forks
Current Biol., 18(8):566-75 (2008)

Akamatsu Y., Murayama Y., Yamada T., Nakazaki T., Tsutsui Y., Ohta K., and Iwasaki H.
Molecular characterization of the Schizosaccharomyces pombe nip1+/ctp1+ gene in DNA double strand break repair in association with the Mre11-Rad50-Nbs1 complex
Mol. Cell Biol., 28(11):3639-51 (2008)

Hirota K., Mizuno K., Shibata T., and Ohta K.
Distinct chromatin modulators regulate to form accessible and repressive chromatin in fission yeast recombination hotspot ade6-M26
Mol. Biol. Cell, 19:1162-1173 (2008)

Kitao H., Kimura M., Yamamoto K., Seo H., Namikoshi K., Agata Y., Ohta K., Takata M.
Regulation of histone H4 acetylation by transcription factor E2A in immunoglobulin gene conversion
Int. Immunol., 20: 277-284 (2008)

Sasanuma H., Hirota K., Fukuda T., Kakusho N., Kugou K., Kawasaki Y., Shibata T., Masai H., Ohta K.
Cdc7-dependent phosphorylation of Mer2 facilitates initiation of yeast meiotic recombination
Genes & Development 3: 255-268 (2008)

Lin W., Hashimoto S., Seo H., Shibata T., Ohta K.
Modulation of immunoglobulin gene conversion frequency and distribution by the histone deacetylase HDAC2 in chicken DT40
Genes to Cells 3: 255-268 (2008)

Fukuda T., Kugou K., Sasanuma H., Shibata T., Ohta K.
Targeted induction of meiotic double-strand breaks reveals chromosomal domain-dependent regulation of Spo11 and interactions among potential sites of meiotic recombination
Nucl. Acids Res. 36: 984-997 (2008)

- 2007 -

Hirota K., Steiner W.W., Shibata T., and Ohta K.
Multiple modes of chromatin configuration at natural meiotic recombination hotspots in fission yeast
Euk. Cell, 6: 2072-2080 (2007)

Fukuda T., Ohya Y., Ohta K.
Conditional genomic rearrangement by designed meiotic recombination using VDE (PI-SceI) in yeast.
Mol. Genet. Genomics, 278: 467-478 (2007)

Ogiwara H., Ui, A., Kawashima S., Kugou K., Onoda F., Iwahashi H., Harata M., Ohta K., Enomoto T., Seki M.
Actin-related protein Arp4 functions in kinetochore assembly
Nucl. Acids Res. 35: 3109-3117 (2007)

Kugou K., Sasanuma H., Matsumoto K., Shirahige K., and Ohta K.
Mre11 mediates gene regulation in yeast spore development
Genes & Genetic Systems, 82: 21-33 (2007)

Sasanuma H., Murakami H., Fukuda T., Shibata T., Nicolas A., and Ohta K.
Meiotic association between Spo11 regulated by Rec102, Rec104, and Rec114
Nucl. Acids Res., 35:1119-1133 (2007)

- 2006 -

Hirota K., Hoffman C., and Ohta K.
Reciprocal nuclear shuttling of two antagonizing Zn-finger proteins that modulates the Tup-family co-repressors function to repress chromatin remodeling
Eukary Cell 5: 1980-1989. (2006)

Seo H., Hashimoto S., Tsuchiya K., Lin W., Shibata T., and Ohta K.
An ex vivo method for rapid generation of monoclonal antibodies (ADLib system)
Nature Protocols, 1: 1502-1506 (2006)

Branzei D., Sollier J., Liberi G., Maeda D., Seki M., Enomoto T., Ohta K., and Foiani M.
Ubc9 and Mms21 mediated sumoylation counteracts recombinogenic events at damaged replication forks
Cell, 127: 509-522 (2006)

Fukuda T., Ohta K., and Ohya Y.
Investigation of the mechanism of meiotic DNA cleavage by VMA1-derived endonuclease uncovers a meiotic alteration in chromatin structure around the target site.
Eukaryotic Cell, 5: 981-990 (2006)

Ogino K., Hirota K., Matsumoto S., Takeda T., Ohta K., Arai K., and Masai H.
Hsk1 kinase is required for induction of meiotic double-strand DNA breaks without involving checkpoint kinases in fission yeast
Proc. Natl. Acad. Sci. USA, 103: 8131-8136 (2006)

- 2005 -

Tokai T., Koshino, H., Kawasaki, T., Igawa,T., Suzuki, Y., Sato, M., Fujimura, M., Eizuka,T., Watanabe, H., Ohta, K., Shibata, T., Kudo, T.,? Inoue, H., Yamaguchi, I., and Kimura, M.
Screening of putative oxygenase genes in the Fusarium graminearum genome sequence database for their role in trichothecene biosynthesis
FEMS Microbiology Letters
, 251: 193-201 (2005)

Seo H., Masuoka M., Murofushi H., Takeda S., Shibata T. & Ohta K.
Rapid generation of specific antibodies by enhanced homologous recombination
Nature Biotech., 23: 731-735 (2005)

Tokai T., Fujimura M., Inoue H., Aoki T., Ohta K., Shibata T., Yamaguchi I., and Kimura M.
Concordant evolution of trichothecene 3-O-acetyltransferase and a rDNA species phylogeny of trichothecene-producing and non-producing fusaria and other ascomycetous fungi
Microbiology, 151: 509-519 (2005)

- 2004 -

Davidson M.K., Shandilya H.K., Hirota K., Ohta K., and Wahls W.
Atf・Pcr1・M26 complex links stress-activated MAP kinase and cAMP-dependent protein kinase pathways via chromatin remodeling of cgs2+.
J. Biol. Chem. 279: 50857-50863 (2004)

Yamada T., Mizuno K., Hirota K., Kon N., Wahls W.P., Hartsuiker E., Murofushi H., Shibata T., and Ohta K.
Roles of histone acetylation and chromatin remodeling factor in a meiotic recombination hotspot
EMBO J. 23: 1792-1803 (2004)

Hirota K., Hasemi T., Yamada T., Mizuno K., Hoffman C.S., Shibata T., and Ohta K.
Fission yeast global repressors regulate the specificity of chromatin alteration in response to distinct environmental stresses
Nucleic Acids Research, 32: 855-862 (2004)

- 2003 -

Hirota K., Hoffman CS., Shibata T., and Ohta K.
Fission yeast Tup1-like repressors repress chromatin remodeling at the fbp1+ promoter and the ade6-M26 recombination hotspot
Genetics, 165: 505-515 (2003)

Hirota K., Tanaka K., Ohta K., and Yamamoto M.
Gef1p and Scd1p, the two GDP-GTP exchange factors for Cdc42p, form a ring structure that shrinks during cytokinesis in Schizosaccharomyces pombe
Mol. Biol. Cell, 14: 3617-3627 (2003)

Tomita K., Matsuura A., Caspari T., Carr A.M., Akamatsu Y., Iwasaki H., Mizuno K., Ohta K., Uritani M., Ushimaru T., Yoshinaga K., and Ueno M.
Competition between the Rad50 complex and the Ku heterodimer reveals a role for Exo1 in processing double-strand break, but not telomeres
Mol. Cell Biol., 23: 5186-5197 (2003)

Murakami H., Borde V., Shibata T., Lichten M. and Ohta K.
Correlation between premeiotic DNA replication and chromatin transition at yeast recombination initiation sites
Nucleic Acids Research, 31, 4085-4090 (2003)

Seo H., Okuhara K., Kurumizaka H., Yamada T., Shibata T., Ohta K., Akiyama T. and Murofushi H.
Incorporation of DUF/FACT into chromatin enhances the accessibility of nucleosomal DNA
BBRC, 303:8-13 (2003)

Marin A., Gallardo M., Kato Y., Shirahige K., Gutierrez G., Ohta K, and Aguilera A.
Relationship between G+C content, ORF-length and mRNA concentration in Saccharomyces cerevisiae
Yeast, 20: 703-711 (2003)

- 2002 -

Pecina A., Smith K. N., Mezard C., Murakami H., Ohta K. & Nicolas A.
Target stimulation of meiotic recombination
Cell, 111: 173-184 (2002)

Farah JA, Hartsuiker E, Mizuno K, Ohta K, Smith GR.
A 160-bp palindrome is a Rad50.Rad32-dependent mitotic recombination hotspot in Schizosaccharomyces pombe.
Genetics 161:461-468. (2002)

Ohta K., and Shibata T.
Hierarchic regulation of recombination
RIKEN Review 41: 28-29 (2001)

- 2001 -

Mizuno K., Hasemi T., Ubukata T., Yamada T., Lehmann E., Kohli J., Watanabe Y., Iino Y., Yamamoto M., Fox M. E., Smith G. R., Murofushi H., Shibata T., and Ohta K.
Counteracting regulation of chromatin remodeling at a fission yeast CRE-related recombination hotspot by SAPK, cAMP-dependent kinase, and meiosis regulators
Genetics 159: 1467-1478 (2001)

Smith K. N., Penkner A., Ohta K., Klein F. and Nicolas A.
B-type cyclins CLB5 and CLB6 control the initiation of recombination and synaptonemal complex formation in yeast meiosis.
Curr. Biol. 11: 88-97. (2001)


 総説・著作 [論文発表へ]


Regulation of recombination by chromatin.
In“DNA Replication, Recombination and Repair: Molecular Mechanisms and Pathology".
Yamada T. and Ohta K. (eds. Kaoru Sugasawa, Springer)(2015) in press     

Beneath the Veil of Biological Complexity There Lies Long Noncoding RNA: Diverse Utilization of lncRNA in Yeast Genomes
In “Long Noncoding RNAs: Structures and Functions”
Kumon T. and Ohta K.
(eds Riki Kurokawa, Springer)(2015) in press

Initiation of meiotic homologous recombination: Flexibility, Impact of Histone Modifications and Chromatin Remodeling
In “Perspectives on DNA Recombination
Szekvolgyi L., Ohta K., and Nicolas A
Cold Spring Harbor Laboratory Press. (2015) in press

Chimeric antibodies
In “Human Monoclonal Antibodies: Methods and Protocols"
Kurosawa K., Waka L., and Ohta K.
(eds Michael Steinitz, Springer) (2013)

Analysis of chromatin structure at meiotic DSB sites in yeasts
Hirota K., Fukuda T., Yamada T., and Ohta K.
In Methods in Molecular Biology “Meiosis: Vol 1, Molecular and Genetic Method” (eds Scott Keeney, Springer), in press (2009)

Genome-wide high-resolution chromatin immunoprecipitation of meiotic chromosomal proteins in S. cerevisiae
Kugou K., and Ohta K.
In Methods in Molecular Biology “Meiosis: Vol 1, Molecular and Genetic Method” (eds Scott Keeney, Springer), in press (2009)

Transcription of mRNA-type long non-coding RNAs (mlonRNAs) disrupts chromatin array
Hirota K., and Ohta K.
Communicative & Integrative Biology, 2:25-26 (2009)

Modulation of immunoglobulin gene conversion in chicken DT40 by enhancing histone acetylation and its application to antibody engineering
Seo H., Yamada T., Hashimoto S., Lin W., and Ohta K.
Biotechnology and Genetic Engineering Reviews (UK), vol. 23, p179-194 (2007)

Mechanisms of regulation of eukaryotic homologous DNA recombination
Shibata T., Mizuno K., Ohta K.
In “Molecular Anatomy of Cellular Systems”, Progress in Biotechnology Vol 22 (Edit. by Endo I., Kudo T., Osada H., Shibata T., Yamaguchi I.) Elsevier, Tokyo (2002)


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